SNP Profiles of SCA 11   View Data

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 1234567891011121314
_Input profile
CCCCGGCCAAGGGGCCAAAAAGGGGGAA
1._RUQ_1686
CCCCGGCCAAGGGGCCATAAGGAGGGAA
2._SCA_11
_____CCGG_AA_____
3._RUQ_374
_____CCGG_AA_____
4._RUQ_374
_____CC_GG__AG___
5._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
6._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
7._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
8._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
9._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
10._SCA_11
_____CCGG_AT_____
11._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
12._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
13._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
14._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
15._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
16._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
17._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
18._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
19._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
20._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
21._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
22._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
23._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
24._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
25._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
26._GC-01-117-6-14
CCCCGGCCTTCCGGGGATTTGGCTCCTT
27._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
28._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
29._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
30._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
31._GC-08-157-3-56
CCCCGGCCTTCCGGGGATTTGGCTCCTT
32._SCA_11
_____CCGG_AT_____
33._SCA_11
_____CCGG_AT_____
34._SCA_11
_____CCGG_AT_____
35._SCA_11
_____CCGG_AT_____
36._SCA_11
_____CCGG_AT_____
37._SCA_11
_____CCGG_AT_____
38._SCA_11
_____CCGG_AT_____
39._SCA_11
_____CCGG_AT_____
40._SCA_11
_____CCGG_AT_____
41._SCA_11
_____CCGG_AT_____
42._SCA_11
_____CCGG_AT_____
43._SCA_11
_____CCGG_AT_____
44._SCA_11
_____CCGG_AT_____
45._SCA_11
_____CCGG_AT_____
46._SCA_11
_____CCGG_AT_____
47._SCA_11
_____CCGG_AT_____
48._SCA_11
_____CCGG_AT_____
49._SCA_11
_____CCGG_AT_____
50._SCA_11
_____CCGG_AT_____
51._SCA_11
_____CCGG_AT_____
52._SCA_11
_____CCGG_AT_____
53._SCA_11
_____CCGG_AT_____
54._SCA_11
_____CCGG_AT_____
55._SCA_11
_____CCGG_AT_____
56._SCA_11
_____CCGG_AT_____
57._RUQ_1686
_____CC____GG___
58._SCA_11
_____CTAA_AA_____
 1516171819202122232425262728
_Input profile
AAACAAGGCCAAAGGGACAAGGAACCAA
1._RUQ_1686
AACCAAAGCCAAGGGGAAAAGGAGCCAA
2._SCA_11
_GTTT_CC_CT_ACTTCCAAGGTT
3._RUQ_374
_GTTT_CC_CT_ACTTCCAGGGTT
4._RUQ_374
_GT_CC___CCCCTTCCAAGGTT
5._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
6._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
7._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
8._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
9._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
10._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
11._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
12._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
13._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
14._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
15._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
16._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
17._GC-01-117-6-14
TTGGTTTTCCAACCCCAATTCCAGGGTT
18._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
19._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
20._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
21._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
22._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
23._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
24._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
25._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
26._GC-01-117-6-14
TTGGTT_CCAACCCCAATTCCAGGGTT
27._GC-08-157-3-56
TTGGTTTT_AACCCCAATTCCAGGGTT
28._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
29._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
30._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
31._GC-08-157-3-56
TTGGTTTTCCAACCCCAATTCCAGGGTT
32._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
33._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
34._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
35._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
36._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
37._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
38._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
39._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
40._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
41._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
42._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
43._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
44._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
45._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
46._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
47._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
48._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
49._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
50._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
51._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
52._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
53._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
54._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
55._SCA_11
_GGTT_CC_CC_AATTCCAGGGTT
56._SCA_11
_GGTT___CC_AATTCCAGGGTT
57._RUQ_1686
_______CCAC_GG__CC
58._SCA_11
_GGCC_AA_TT_CCCTGGAATTCT
 2930313233343536373839404142
_Input profile
GGAAGGCCCGAGGGAGCGAAAAAAAAGG
1._RUQ_1686
GGAAGGCCGGAAGGAACGAAATAAAGGG
2._SCA_11
CC__CCCGAG_CTCG__AA__
3._RUQ_374
CC__CCCGAG_CTCG__AA__
4._RUQ_374
__GGCCCGAG_CT____AAGG
5._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
6._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
7._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
8._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
9._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
10._SCA_11
CC__CCCCAA_TTCG__AA__
11._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
12._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
13._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
14._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
15._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
16._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
17._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
18._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
19._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
20._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
21._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
22._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
23._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
24._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
25._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
26._GC-01-117-6-14
CCTTGGCCCCAAGGTTCGTTATAAAGGG
27._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
28._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
29._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
30._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
31._GC-08-157-3-56
CCTTGGCCCCAAGGTTCGTTATAAAGGG
32._SCA_11
CC__CCCCAA_TTCG__AA__
33._SCA_11
CC__CCCCAA_TTCG__AA__
34._SCA_11
CC__CCCCAA_TTCG__AA__
35._SCA_11
CC__CCCCAA_TTCG__AA__
36._SCA_11
CC__CCCCAA_TTCG__AA__
37._SCA_11
CC__CCCCAA_TTCG__AA__
38._SCA_11
CC__CCCCAA_TTCG__AA__
39._SCA_11
CC__CCCCAA_TTCG__AA__
40._SCA_11
CC__CCCCAA_TTCG__AA__
41._SCA_11
CC__CCCCAA_TTCG__AA__
42._SCA_11
CC__CCCCAA_TTCG__AA__
43._SCA_11
CC__CCCCAA_TTCG__AA__
44._SCA_11
CC__CCCCAA_TTCG__AA__
45._SCA_11
CC__CCCCAA_TTCG__AA__
46._SCA_11
CC__CCCCAA_TTCG__AA__
47._SCA_11
CC__CCCCAA_TTCG__AA__
48._SCA_11
CC__CCCCAA_TTCG__AA__
49._SCA_11
CC__CCCCAA_TTCG__AA__
50._SCA_11
CC__CCCCAA_TTCG__AA__
51._SCA_11
CC__CCCCAA_TTCG__AA__
52._SCA_11
CC__CCCCAA_TTCG__AA__
53._SCA_11
CC__CCCCAA_TTCG__AA__
54._SCA_11
CC__CCCCAA_TTCG__AA__
55._SCA_11
CC__CCCCAA_TTCG__AA__
56._SCA_11
CC__CCCCAA_TTCG__AA__
57._RUQ_1686
__GGAACGAG_______GG
58._SCA_11
CT__ACCCAA_CTGG__TT__
 4344454647484950515253545556
_Input profile
AAGGAAGGAAAAGGACAAAACCGGCCCC
1._RUQ_1686
AAGGAGAGAGAAGGAAAAAACCGGCGCC
2._SCA_11
AA___AA___AA_GG_CCCC
3._RUQ_374
AA___AA___AA_GG_CCCC
4._RUQ_374
AA_______AA_GG_CCCC
5._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
6._GC-08-157-3-56
AACCAGAGAGAA_AAAAAA_GGCGCC
7._GC-01-117-6-14
AACCAGAGAGAA_AAAAAAGGGGCGCC
8._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
9._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
10._SCA_11
AA___AG___AA_GG_CGCC
11._GC-01-117-6-14
AACCAGAGAGAA_AAAAAAGGGGCGCC
12._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
13._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
14._GC-01-117-6-14
AACCAGAGAGAA_AAAAAAGGGGCGCC
15._GC-01-117-6-14
AACCAGAGAGAA_AAAAAAGGGGCGCC
16._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
17._GC-01-117-6-14
AACCAGAGAGAA_AAAAAAGGGGCGCC
18._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
19._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
20._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
21._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
22._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
23._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
24._GC-08-157-3-56
AACCAGAG_AA_AAAAAAGGGGCGCC
25._GC-08-157-3-56
AACC_AGAGAA_AAAAAAGGGGCGCC
26._GC-01-117-6-14
AACCAGAGAGAA_AAAAAAGGGGCGCC
27._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
28._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
29._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
30._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGG_CGCC
31._GC-08-157-3-56
AACCAGAGAGAA_AAAAAAGGGGCGCC
32._SCA_11
AA___AG___AA_GG_CGCC
33._SCA_11
AA___AG___AA_GG_CGCC
34._SCA_11
AA___AG___AA___CGCC
35._SCA_11
AA___AG___AA_GG_CGCC
36._SCA_11
AA___AG___AA_GG_CGCC
37._SCA_11
AA___AG___AA_GG_CGCC
38._SCA_11
AA___AG___AA_GG_CGCC
39._SCA_11
AA___AG___AA_GG_CGCC
40._SCA_11
AA___AG___AA_GG_CGCC
41._SCA_11
AA___AG___AA_GG_CGCC
42._SCA_11
AA___AG___AA_GG_CGCC
43._SCA_11
AA___AG___AA_GG_CGCC
44._SCA_11
AA___AG___AA_GG_CGCC
45._SCA_11
AA___AG___AA_GG_CGCC
46._SCA_11
AA___AG___AA_GG_CGCC
47._SCA_11
AA___AG___AA_GG_CGCC
48._SCA_11
AA___AG___AA_GG_CGCC
49._SCA_11
AA___AG___AA_GG_CGCC
50._SCA_11
AA___AG___AA_GG_CGCC
51._SCA_11
AA___AG___AA_GG_CGCC
52._SCA_11
AA___AG___AA_GG_CGCC
53._SCA_11
AA___AG___AA_GG_CGCC
54._SCA_11
AA___AG___AA_GG_CGCC
55._SCA_11
AA_______AA_GG_CGCC
56._SCA_11
AA___AG___AA_GG_CGCC
57._RUQ_1686
ATCT__________GGAA
58._SCA_11
AT___GG___CC_TT_CCCC
 5758596061626364656667686970
_Input profile
GGGGAAAGAACCAAAAAACCAACCGGAA
1._RUQ_1686
GGGGAAAAAACCAAAAAACCAACCGGAA
2._SCA_11
__TT__GG________
3._RUQ_374
__TT__GG________
4._RUQ_374
_CCTT__GGAATT__TTCC__
5._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
6._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
7._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
8._GC-08-157-3-56
CCCCTTAAAAGGAATT_GGTTCCCCAA
9._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
10._SCA_11
__TT__GG________
11._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
12._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
13._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
14._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
15._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
16._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
17._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
18._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
19._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
20._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
21._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
22._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
23._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
24._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
25._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
26._GC-01-117-6-14
CCCCTTAAAAGGAATTTTGGTTCCCCAA
27._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
28._GC-08-157-3-56
CCCCTTAA_GGAATTTTGGTTCCCCAA
29._GC-08-157-3-56
CCCCTTAA_GGAATTTTGGTTCCCCAA
30._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
31._GC-08-157-3-56
CCCCTTAAAAGGAATTTTGGTTCCCCAA
32._SCA_11
__TT__GG________
33._SCA_11
__TT__GG________
34._SCA_11
__TT__GG________
35._SCA_11
__TT__GG________
36._SCA_11
__TT__GG________
37._SCA_11
__TT__GG________
38._SCA_11
__TT__GG________
39._SCA_11
__TT__GG________
40._SCA_11
__TT__GG________
41._SCA_11
__TT__GG________
42._SCA_11
__TT__GG________
43._SCA_11
__TT__GG________
44._SCA_11
__TT__GG________
45._SCA_11
__TT__GG________
46._SCA_11
__TT__GG________
47._SCA_11
__TT__GG________
48._SCA_11
__TT__GG________
49._SCA_11
__TT__GG________
50._SCA_11
__TT__GG________
51._SCA_11
__TT__GG________
52._SCA_11
__TT__GG________
53._SCA_11
__TT__GG________
54._SCA_11
__TT__GG________
55._SCA_11
__TT__GG________
56._SCA_11
__TT__GG________
57._RUQ_1686
_CC______TT____GG
58._SCA_11
__CC__GG________
 7172737475767778798081   
_Input profile
GGAAGGAGCCGGCCGGTTGGAAX_XX_XX_X
1._RUQ_1686
GGAAGGAGCCAGCCGGTTGGAAX_XX_XX_X
2._SCA_11
CCTT___CCCC_TTCCAAX_XX_XX_X
3._RUQ_374
CCTT___CCCC_TTCCAAX_XX_XX_X
4._RUQ_374
CCTT_-CC_____AAX_XX_XX_X
5._GC-08-157-3-56
_TTCCAGCC_CCCCTTCCAAX_XX_XX_X
6._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
7._GC-01-117-6-14
CC_CCAGCCCTCCCCTTCCAAX_XX_XX_X
8._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
9._GC-08-157-3-56
_TTCCAGCCCTCCCCTTCCAAX_XX_XX_X
10._SCA_11
_TT____CC_TTCCAAX_XX_XX_X
11._GC-01-117-6-14
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
12._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
13._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
14._GC-01-117-6-14
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
15._GC-01-117-6-14
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
16._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
17._GC-01-117-6-14
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
18._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
19._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
20._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
21._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
22._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
23._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
24._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
25._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
26._GC-01-117-6-14
CCTTCC_CCCTCCCCTTCCAAX_XX_XX_X
27._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
28._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
29._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
30._GC-08-157-3-56
CCTTCCAGCCCTCCCCTTCCAAX_XX_XX_X
31._GC-08-157-3-56
CCTTCCAG_CTCCCCTTCCAAX_XX_XX_X
32._SCA_11
_TT___CTCC_TTCCAAX_XX_XX_X
33._SCA_11
CC____CTCC_TTCCAAX_XX_XX_X
34._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
35._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
36._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
37._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
38._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
39._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
40._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
41._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
42._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
43._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
44._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
45._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
46._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
47._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
48._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
49._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
50._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
51._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
52._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
53._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
54._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
55._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
56._SCA_11
CCTT___CTCC_TTCCAAX_XX_XX_X
57._RUQ_1686
GGCT_______CT_X_XX_XX_X
58._SCA_11
CGCC___TTGG_AACTAAX_XX_XX_X

Input profile: SCA_11 MITC-000057

 
 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

1._SCA_11 RUQ_1686

87.7 %
81 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._SCA_11

51.4 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

3._SCA_11 RUQ_374

50 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._SCA_11 RUQ_374

47.1 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._SCA_11 GC-08-157-3-56

44.9 %
78 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._SCA_11 GC-08-157-3-56

44.3 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._SCA_11 GC-01-117-6-14

44.3 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._SCA_11 GC-08-157-3-56

44.3 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._SCA_11 GC-08-157-3-56

44.3 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

10._SCA_11

43.9 %
33 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

11._SCA_11 GC-01-117-6-14

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._SCA_11 GC-01-117-6-14

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

15._SCA_11 GC-01-117-6-14

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

16._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._SCA_11 GC-01-117-6-14

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

19._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

21._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

22._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

23._SCA_11 GC-08-157-3-56

43.8 %
80 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

24._SCA_11 GC-08-157-3-56

43.7 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

25._SCA_11 GC-08-157-3-56

43.7 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

26._SCA_11 GC-01-117-6-14

43.6 %
78 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

27._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

28._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

30._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

31._SCA_11 GC-08-157-3-56

43 %
79 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

32._SCA_11

42.6 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

33._SCA_11

42.6 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

34._SCA_11

42.6 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

35._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

36._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

37._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

38._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

39._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

40._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

41._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

42._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

43._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

44._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

45._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

46._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

47._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

48._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

49._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

50._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

51._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

52._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

53._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

54._SCA_11

41.4 %
35 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

55._SCA_11

41.2 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

56._SCA_11

39.7 %
34 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

57._SCA_11 RUQ_1686

38.1 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

58._SCA_11

27.1 %
35 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998